Ameer,
You will want to update your version of Cygwin to ensure that everything build correctly with the new sample application, which can be done here:
http://www.cygwin.com/
Once you've updated Cygwin you can install the most recent GNU Tools toolchain build from Logic:
http://www.logicpd.com/do...gnutools_install.exe
After this you should be able to build the sample application without problems. Please let me know if this solves the issues that you are seeing or if I can assist you with any other questions.
Thanks,